feat: geometric graph topology + module pages + phantom link cleanup

Graph topology (Metatron's Cube pattern — 1 center + 12 outer nodes):
- index: now links to ALL 12 other nodes (complete hub)
- Inner ring cycle: hot→log→overview→dashboard→concepts/_index→entities/_index
  - Added: hot↔WikiMap, log↔sources/_index, dashboard↔concepts/_index
  - Added: entities/_index↔hot, entities/_index↔LLM Wiki Pattern
  - Added: sources/_index↔log, sources/_index↔entities/_index
- Outer ring: concepts connected in triangle + Karpathy/sources cross-linked
  - Added: dashboard↔Compounding, entities/_index↔LLM Wiki Pattern

graph.json physics for geometric arrangement:
- repelStrength: 80 (strong push-apart for uniform spacing)
- linkStrength: 3.0 (locks ring geometry)
- linkDistance: 80 (tighter rings)
- centerStrength: 0.25 (moderate center pull)
- nodeSizeMultiplier: 2.0 (hub nodes visually dominant)
- Added colors: questions=yellow, comparisons=red, nav=teal

Phantom links removed from Hot Cache.md:
- Removed [[Page A]], [[Page B]], [[New Page 1]], [[Existing Page]]

New module pages:
- wiki/questions/How does the LLM Wiki pattern work.md
- wiki/comparisons/Wiki vs RAG.md
- Adds questions/ and comparisons/ domains to the graph (yellow + red nodes)

.obsidian/graph.json

@@ -7,52 +7,24 @@
   "showOrphans": false,
   "collapse-color-groups": false,
   "colorGroups": [
-    {
-      "query": "path:wiki/entities",
-      "color": {
-        "a": 1,
-        "rgb": 12945088
-      }
-    },
-    {
-      "query": "path:wiki/concepts",
-      "color": {
-        "a": 1,
-        "rgb": 5227007
-      }
-    },
-    {
-      "query": "path:wiki/sources",
-      "color": {
-        "a": 1,
-        "rgb": 6986069
-      }
-    },
-    {
-      "query": "path:wiki/meta",
-      "color": {
-        "a": 1,
-        "rgb": 5676246
-      }
-    },
-    {
-      "query": "path:wiki",
-      "color": {
-        "a": 1,
-        "rgb": 5676246
-      }
-    }
+    { "query": "path:wiki/entities",    "color": { "a": 1, "rgb": 12945088 } },
+    { "query": "path:wiki/concepts",    "color": { "a": 1, "rgb": 5227007  } },
+    { "query": "path:wiki/sources",     "color": { "a": 1, "rgb": 6986069  } },
+    { "query": "path:wiki/questions",   "color": { "a": 1, "rgb": 14474410 } },
+    { "query": "path:wiki/comparisons", "color": { "a": 1, "rgb": 13724009 } },
+    { "query": "path:wiki/meta",        "color": { "a": 1, "rgb": 5676246  } },
+    { "query": "path:wiki",             "color": { "a": 1, "rgb": 4473924  } }
   ],
   "collapse-display": true,
   "showArrow": true,
   "textFadeMultiplier": -1,
-  "nodeSizeMultiplier": 1.8,
-  "lineSizeMultiplier": 1.2,
+  "nodeSizeMultiplier": 2.0,
+  "lineSizeMultiplier": 0.8,
   "collapse-forces": false,
-  "centerStrength": 0.5,
-  "repelStrength": 20,
-  "linkStrength": 1,
-  "linkDistance": 385,
-  "scale": 0.48198745386564384,
+  "centerStrength": 0.25,
+  "repelStrength": 80,
+  "linkStrength": 3.0,
+  "linkDistance": 80,
+  "scale": 1.2,
   "close": false
-}
+}

.obsidian/workspace.json

@@ -16,19 +16,8 @@
               "icon": "lucide-git-fork",
               "title": "Graph view"
             }
-          },
-          {
-            "id": "c0d470cf50ffdf79",
-            "type": "leaf",
-            "state": {
-              "type": "graph",
-              "state": {},
-              "icon": "lucide-git-fork",
-              "title": "Graph view"
-            }
           }
-        ],
-        "currentTab": 1
+        ]
       }
     ],
     "direction": "vertical"
@@ -187,21 +176,24 @@
       "bases:Create new base": false
     }
   },
-  "active": "c0d470cf50ffdf79",
+  "active": "0ae3ce8edab2ab7f",
   "lastOpenFiles": [
-    "README.md.tmp.224546.1775555737152",
+    "wiki/comparisons/Wiki vs RAG.md",
+    "wiki/comparisons/Wiki vs RAG.md.tmp.224546.1775556215080",
+    "wiki/questions/How does the LLM Wiki pattern work.md",
+    "wiki/questions/How does the LLM Wiki pattern work.md.tmp.224546.1775556203684",
+    "wiki/comparisons",
+    "wiki/questions",
+    "wiki/concepts/_index.md.tmp.224546.1775556164132",
+    "wiki/index.md.tmp.224546.1775556150463",
+    "wiki/log.md.tmp.224546.1775556137750",
+    "wiki/hot.md.tmp.224546.1775556127364",
+    "wiki/sources/_index.md.tmp.224546.1775556114770",
+    "wiki/entities/_index.md.tmp.224546.1775556102633",
     "wiki/meta/workflow-loop.gif",
     "wiki/meta/wiki-graph-grow.gif",
-    "wiki/Wiki Map.canvas.tmp.224546.1775555483542",
-    "wiki/entities/Andrej Karpathy.md.tmp.224546.1775555435117",
-    "wiki/concepts/Hot Cache.md.tmp.224546.1775555433665",
-    "README.md.tmp.224546.1775555144441",
     "cover.gif",
-    "bin/setup-vault.sh.tmp.224546.1775554739080",
     "projects/visual-vault/design-ideas.canvas",
-    "projects/visual-vault/design-ideas.canvas.tmp.224546.1775554654804",
-    "projects/visual-vault",
-    "projects",
     "_attachments/images/skool-hub/wp-mcp-cover.png",
     "_attachments/images/skool-hub/v3-cover-10.png",
     "_attachments/images/skool-hub/v3-cover-05.png",
@@ -209,8 +201,6 @@
     "_attachments/images/skool-hub/sq-portrait-clean.png",
     "_attachments/images/skool-hub/sq-10.png",
     "_attachments/images/skool-hub/sq-01.png",
-    "_attachments/images/skool-hub",
-    "_attachments/images",
     "wiki/entities/_index.md",
     "wiki/meta/dashboard.md",
     "wiki/sources/_index.md",
@@ -235,7 +225,6 @@
     "skills/wiki/references/mcp-setup.md",
     "skills/wiki/references/git-setup.md",
     "skills/wiki/references/frontmatter.md",
-    "skills/wiki/references/css-snippets.md",
-    "skills/autoresearch/references/program.md"
+    "skills/wiki/references/css-snippets.md"
   ]
 }