feat: geometric graph topology + module pages + phantom link cleanup

Graph topology (Metatron's Cube pattern — 1 center + 12 outer nodes):
- index: now links to ALL 12 other nodes (complete hub)
- Inner ring cycle: hot→log→overview→dashboard→concepts/_index→entities/_index
  - Added: hot↔WikiMap, log↔sources/_index, dashboard↔concepts/_index
  - Added: entities/_index↔hot, entities/_index↔LLM Wiki Pattern
  - Added: sources/_index↔log, sources/_index↔entities/_index
- Outer ring: concepts connected in triangle + Karpathy/sources cross-linked
  - Added: dashboard↔Compounding, entities/_index↔LLM Wiki Pattern

graph.json physics for geometric arrangement:
- repelStrength: 80 (strong push-apart for uniform spacing)
- linkStrength: 3.0 (locks ring geometry)
- linkDistance: 80 (tighter rings)
- centerStrength: 0.25 (moderate center pull)
- nodeSizeMultiplier: 2.0 (hub nodes visually dominant)
- Added colors: questions=yellow, comparisons=red, nav=teal

Phantom links removed from Hot Cache.md:
- Removed [[Page A]], [[Page B]], [[New Page 1]], [[Existing Page]]

New module pages:
- wiki/questions/How does the LLM Wiki pattern work.md
- wiki/comparisons/Wiki vs RAG.md
- Adds questions/ and comparisons/ domains to the graph (yellow + red nodes)

wiki/index.md

@@ -10,6 +10,15 @@ related:
   - "[[overview]]"
   - "[[log]]"
   - "[[hot]]"
+  - "[[dashboard]]"
+  - "[[Wiki Map]]"
+  - "[[concepts/_index]]"
+  - "[[entities/_index]]"
+  - "[[sources/_index]]"
+  - "[[LLM Wiki Pattern]]"
+  - "[[Hot Cache]]"
+  - "[[Compounding Knowledge]]"
+  - "[[Andrej Karpathy]]"
 ---
 
 # Wiki Index