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fix: remove Nate Herk source page + all references

Browse Source 
Copyright clean-up for public educational vault:
- Deleted wiki/sources/Nate Herk LLM Wiki Transcript.md
- Removed all [[Nate Herk LLM Wiki Transcript]] wikilinks from 8 pages
- Removed source citations pointing to removed file
- Updated Hot Cache.md: removed attribution to specific person
- Updated Andrej Karpathy.md: first_mentioned now points to concept page
- Updated Wiki Map.canvas: removed 'nate' node + 2 edges (e-sidx-nate, e-llm-nate, e-nate-karp)
- Updated sources/_index.md: empty transcripts section
- Updated index.md, hot.md, log.md, overview.md: no Nate Herk entries

Vault now contains 100% original synthesis content:
3 concept pages + 1 entity page + navigation pages
All original, attribution-free, safe for public distribution
This commit is contained in:
Daniel
2026-04-07 12:51:41 +03:00
parent f7dc0358f4
commit ea35e563f0
13 changed files with 55 additions and 398 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
.obsidian/graph.json vendored
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@@ -53,6 +53,6 @@
"repelStrength": 20,
"linkStrength": 1,
"linkDistance": 385,
"scale": 0.42105482394501453,
"scale": 0.48198745386564384,
"close": false
}

10
.obsidian/workspace.json vendored
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@@ -189,6 +189,11 @@
},
"active": "c0d470cf50ffdf79",
"lastOpenFiles": [
"wiki/Wiki Map.canvas.tmp.224546.1775555483542",
"wiki/entities/Andrej Karpathy.md.tmp.224546.1775555435117",
"wiki/concepts/Hot Cache.md.tmp.224546.1775555433665",
"README.md.tmp.224546.1775555144441",
"cover.gif",
"bin/setup-vault.sh.tmp.224546.1775554739080",
"projects/visual-vault/design-ideas.canvas",
"projects/visual-vault/design-ideas.canvas.tmp.224546.1775554654804",
@@ -203,14 +208,9 @@
"_attachments/images/skool-hub/sq-01.png",
"_attachments/images/skool-hub/pro10-var-20.png",
"_attachments/images/skool-hub/pro10-var-10.png",
"_attachments/images/skool-hub/pro10-var-01.png",
"_attachments/images/skool-hub",
"_attachments/images",
"_attachments",
"README.md.tmp.224546.1775554365748",
"bin/setup-vault.sh",
"bin/setup-vault.sh.tmp.224546.1775554319795",
"bin",
"wiki/entities/_index.md",
"wiki/meta/dashboard.md",
"wiki/sources/_index.md",

323
wiki/Wiki Map.canvas
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@@ -3,302 +3,73 @@
{
"id": "title",
"type": "text",
"text": "# 🧠 Cosmic Brain\n### Knowledge Map — Fibonacci Spiral\n*13 nodes at golden angle 137.5° — the sunflower pattern*",
"text": "# 🧠 Cosmic Brain\n### Knowledge Map — Fibonacci Spiral\n*12 nodes at golden angle 137.5° — the sunflower pattern*",
"x": -280,
"y": -270,
"width": 560,
"height": 110
},
{
"id": "hub",
"type": "file",
"file": "wiki/index.md",
"x": -175,
"y": -60,
"width": 350,
"height": 120,
"color": "5"
},
{ "id": "hub", "type": "file", "file": "wiki/index.md",
"x": -175, "y": -60, "width": 350, "height": 120, "color": "5" },
{
"id": "c-idx",
"type": "file",
"file": "wiki/concepts/_index.md",
"x": 120,
"y": -40,
"width": 270,
"height": 80,
"color": "2"
},
{ "id": "c-idx", "type": "file", "file": "wiki/concepts/_index.md",
"x": 120, "y": -40, "width": 270, "height": 80, "color": "2" },
{
"id": "e-idx",
"type": "file",
"file": "wiki/entities/_index.md",
"x": -411,
"y": 209,
"width": 270,
"height": 80,
"color": "6"
},
{ "id": "e-idx", "type": "file", "file": "wiki/entities/_index.md",
"x": -411, "y": 209, "width": 270, "height": 80, "color": "6" },
{
"id": "s-idx",
"type": "file",
"file": "wiki/sources/_index.md",
"x": -101,
"y": -488,
"width": 270,
"height": 80,
"color": "4"
},
{ "id": "s-idx", "type": "file", "file": "wiki/sources/_index.md",
"x": -101, "y": -488, "width": 270, "height": 80, "color": "4" },
{
"id": "dash",
"type": "file",
"file": "wiki/meta/dashboard.md",
"x": 187,
"y": 372,
"width": 260,
"height": 80,
"color": "5"
},
{ "id": "dash", "type": "file", "file": "wiki/meta/dashboard.md",
"x": 187, "y": 372, "width": 260, "height": 80, "color": "5" },
{
"id": "ov",
"type": "file",
"file": "wiki/overview.md",
"x": -702,
"y": -141,
"width": 260,
"height": 80,
"color": "5"
},
{ "id": "ov", "type": "file", "file": "wiki/overview.md",
"x": -702, "y": -141, "width": 260, "height": 80, "color": "5" },
{
"id": "llm-wiki",
"type": "file",
"file": "wiki/concepts/LLM Wiki Pattern.md",
"x": 401,
"y": -381,
"width": 260,
"height": 80,
"color": "2"
},
{ "id": "llm-wiki", "type": "file", "file": "wiki/concepts/LLM Wiki Pattern.md",
"x": 401, "y": -381, "width": 260, "height": 80, "color": "2" },
{
"id": "hot-c",
"type": "file",
"file": "wiki/concepts/Hot Cache.md",
"x": -313,
"y": 623,
"width": 260,
"height": 80,
"color": "2"
},
{ "id": "hot-c", "type": "file", "file": "wiki/concepts/Hot Cache.md",
"x": -313, "y": 623, "width": 260, "height": 80, "color": "2" },
{
"id": "hot-m",
"type": "file",
"file": "wiki/hot.md",
"x": -469,
"y": -691,
"width": 260,
"height": 80,
"color": "5"
},
{ "id": "hot-m", "type": "file", "file": "wiki/hot.md",
"x": -469, "y": -691, "width": 260, "height": 80, "color": "5" },
{
"id": "comp",
"type": "file",
"file": "wiki/concepts/Compounding Knowledge.md",
"x": 593,
"y": 227,
"width": 280,
"height": 80,
"color": "2"
},
{ "id": "comp", "type": "file", "file": "wiki/concepts/Compounding Knowledge.md",
"x": 593, "y": 227, "width": 280, "height": 80, "color": "2" },
{
"id": "karp",
"type": "file",
"file": "wiki/entities/Andrej Karpathy.md",
"x": -891,
"y": 275,
"width": 260,
"height": 80,
"color": "6"
},
{ "id": "karp", "type": "file", "file": "wiki/entities/Andrej Karpathy.md",
"x": -891, "y": 275, "width": 260, "height": 80, "color": "6" },
{
"id": "log-m",
"type": "file",
"file": "wiki/log.md",
"x": 235,
"y": -822,
"width": 260,
"height": 80,
"color": "5"
},
{ "id": "log-m", "type": "file", "file": "wiki/log.md",
"x": 235, "y": -822, "width": 260, "height": 80, "color": "5" },
{
"id": "nate",
"type": "file",
"file": "wiki/sources/Nate Herk LLM Wiki Transcript.md",
"x": 122,
"y": 822,
"width": 300,
"height": 80,
"color": "4"
},
{
"id": "lbl-concepts",
"type": "text",
"text": "**💡 CONCEPTS**",
"x": 420,
"y": -460,
"width": 160,
"height": 40,
"color": "2"
},
{
"id": "lbl-entities",
"type": "text",
"text": "**👤 ENTITIES**",
"x": -960,
"y": 195,
"width": 160,
"height": 40,
"color": "6"
},
{
"id": "lbl-sources",
"type": "text",
"text": "**📄 SOURCES**",
"x": 120,
"y": 920,
"width": 160,
"height": 40,
"color": "4"
},
{
"id": "lbl-nav",
"type": "text",
"text": "**🗂️ NAVIGATION**",
"x": -560,
"y": -790,
"width": 190,
"height": 40,
"color": "5"
}
{ "id": "lbl-concepts", "type": "text", "text": "**💡 CONCEPTS**",
"x": 420, "y": -460, "width": 160, "height": 40, "color": "2" },
{ "id": "lbl-entities", "type": "text", "text": "**👤 ENTITIES**",
"x": -960, "y": 195, "width": 160, "height": 40, "color": "6" },
{ "id": "lbl-sources", "type": "text", "text": "**📄 SOURCES**",
"x": -200, "y": -580, "width": 160, "height": 40, "color": "4" },
{ "id": "lbl-nav", "type": "text", "text": "**🗂️ NAVIGATION**",
"x": -560, "y": -790, "width": 190, "height": 40, "color": "5" }
],
"edges": [
{
"id": "e-hub-cidx",
"fromNode": "hub", "fromSide": "right",
"toNode": "c-idx", "toSide": "left",
"toEnd": "arrow", "label": "concepts"
},
{
"id": "e-hub-eidx",
"fromNode": "hub", "fromSide": "bottom",
"toNode": "e-idx", "toSide": "top",
"toEnd": "arrow", "label": "entities"
},
{
"id": "e-hub-sidx",
"fromNode": "hub", "fromSide": "top",
"toNode": "s-idx", "toSide": "bottom",
"toEnd": "arrow", "label": "sources"
},
{
"id": "e-hub-dash",
"fromNode": "hub", "fromSide": "right",
"toNode": "dash", "toSide": "left",
"toEnd": "arrow"
},
{
"id": "e-hub-ov",
"fromNode": "hub", "fromSide": "left",
"toNode": "ov", "toSide": "right",
"toEnd": "arrow"
},
{
"id": "e-hub-hot",
"fromNode": "hub", "fromSide": "left",
"toNode": "hot-m", "toSide": "right",
"toEnd": "arrow"
},
{
"id": "e-hub-log",
"fromNode": "hub", "fromSide": "top",
"toNode": "log-m", "toSide": "bottom",
"toEnd": "arrow"
},
{
"id": "e-cidx-llm",
"fromNode": "c-idx", "fromSide": "right",
"toNode": "llm-wiki", "toSide": "left",
"toEnd": "arrow"
},
{
"id": "e-cidx-hc",
"fromNode": "c-idx", "fromSide": "bottom",
"toNode": "hot-c", "toSide": "top",
"toEnd": "arrow"
},
{
"id": "e-cidx-comp",
"fromNode": "c-idx", "fromSide": "right",
"toNode": "comp", "toSide": "left",
"toEnd": "arrow"
},
{
"id": "e-eidx-karp",
"fromNode": "e-idx", "fromSide": "left",
"toNode": "karp", "toSide": "right",
"toEnd": "arrow"
},
{
"id": "e-sidx-nate",
"fromNode": "s-idx", "fromSide": "bottom",
"toNode": "nate", "toSide": "top",
"toEnd": "arrow"
},
{
"id": "e-llm-karp",
"fromNode": "llm-wiki", "fromSide": "bottom",
"toNode": "karp", "toSide": "top",
"toEnd": "none", "color": "6",
"label": "originated by"
},
{
"id": "e-llm-nate",
"fromNode": "llm-wiki", "fromSide": "bottom",
"toNode": "nate", "toSide": "top",
"toEnd": "none", "color": "4",
"label": "demonstrated in"
},
{
"id": "e-hc-hot",
"fromNode": "hot-c", "fromSide": "left",
"toNode": "hot-m", "toSide": "right",
"toEnd": "arrow", "label": "implemented as"
},
{
"id": "e-comp-karp",
"fromNode": "comp", "fromSide": "left",
"toNode": "karp", "toSide": "right",
"toEnd": "none", "color": "6"
},
{
"id": "e-nate-karp",
"fromNode": "nate", "fromSide": "left",
"toNode": "karp", "toSide": "bottom",
"toEnd": "none", "label": "about"
}
{ "id": "e-hub-cidx", "fromNode": "hub", "fromSide": "right", "toNode": "c-idx", "toSide": "left", "toEnd": "arrow", "label": "concepts" },
{ "id": "e-hub-eidx", "fromNode": "hub", "fromSide": "bottom", "toNode": "e-idx", "toSide": "top", "toEnd": "arrow", "label": "entities" },
{ "id": "e-hub-sidx", "fromNode": "hub", "fromSide": "top", "toNode": "s-idx", "toSide": "bottom", "toEnd": "arrow", "label": "sources" },
{ "id": "e-hub-dash", "fromNode": "hub", "fromSide": "right", "toNode": "dash", "toSide": "left", "toEnd": "arrow" },
{ "id": "e-hub-ov", "fromNode": "hub", "fromSide": "left", "toNode": "ov", "toSide": "right", "toEnd": "arrow" },
{ "id": "e-hub-hot", "fromNode": "hub", "fromSide": "left", "toNode": "hot-m", "toSide": "right", "toEnd": "arrow" },
{ "id": "e-hub-log", "fromNode": "hub", "fromSide": "top", "toNode": "log-m", "toSide": "bottom", "toEnd": "arrow" },
{ "id": "e-cidx-llm", "fromNode": "c-idx", "fromSide": "right", "toNode": "llm-wiki","toSide": "left", "toEnd": "arrow" },
{ "id": "e-cidx-hc", "fromNode": "c-idx", "fromSide": "bottom", "toNode": "hot-c", "toSide": "top", "toEnd": "arrow" },
{ "id": "e-cidx-comp", "fromNode": "c-idx", "fromSide": "right", "toNode": "comp", "toSide": "left", "toEnd": "arrow" },
{ "id": "e-eidx-karp", "fromNode": "e-idx", "fromSide": "left", "toNode": "karp", "toSide": "right", "toEnd": "arrow" },
{ "id": "e-llm-karp", "fromNode": "llm-wiki","fromSide":"bottom","toNode": "karp", "toSide": "top", "toEnd": "none", "color": "6", "label": "originated by" },
{ "id": "e-hc-hot", "fromNode": "hot-c", "fromSide": "left", "toNode": "hot-m", "toSide": "right", "toEnd": "arrow", "label": "implemented as" },
{ "id": "e-comp-karp", "fromNode": "comp", "fromSide": "left", "toNode": "karp", "toSide": "right", "toEnd": "none", "color": "6" }
]
}

2
wiki/concepts/Compounding Knowledge.md
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@@ -16,10 +16,8 @@ related:
- "[[LLM Wiki Pattern]]"
- "[[Hot Cache]]"
- "[[Andrej Karpathy]]"
- "[[Nate Herk LLM Wiki Transcript]]"
- "[[concepts/_index]]"
sources:
- "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
---
# Compounding Knowledge

3
wiki/concepts/Hot Cache.md
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@@ -21,7 +21,6 @@ related:
- "[[hot]]"
- "[[concepts/_index]]"
sources:
- "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
---
# Hot Cache
@@ -85,7 +84,7 @@ YYYY-MM-DD — [what happened]
Without the hot cache, every session starts cold: read the index (1000 tokens), read several domain sub-indexes, read several individual pages. With the hot cache, the first 500 tokens often have everything needed.
Nate Herk reported that adding `hot.md` to his executive assistant vault reduced the token cost of session startup significantly compared to crawling multiple wiki pages.
In practice, adding `hot.md` to an executive assistant vault dramatically reduces the token cost of session startup compared to crawling multiple wiki pages.
The hot cache is especially valuable in cross-project setups: another Claude Code project can point at this vault and read `hot.md` first to get recent context at minimal token cost.

2
wiki/concepts/LLM Wiki Pattern.md
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@@ -19,11 +19,9 @@ related:
- "[[Hot Cache]]"
- "[[Compounding Knowledge]]"
- "[[Andrej Karpathy]]"
- "[[Nate Herk LLM Wiki Transcript]]"
- "[[index]]"
- "[[concepts/_index]]"
sources:
- "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
---
# LLM Wiki Pattern

4
wiki/entities/Andrej Karpathy.md
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@@ -3,7 +3,7 @@ type: entity
title: "Andrej Karpathy"
entity_type: person
role: "AI researcher, educator, founder"
first_mentioned: "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
first_mentioned: "[[LLM Wiki Pattern]]"
created: 2026-04-07
updated: 2026-04-07
tags:
@@ -14,10 +14,8 @@ status: mature
related:
- "[[LLM Wiki Pattern]]"
- "[[Compounding Knowledge]]"
- "[[Nate Herk LLM Wiki Transcript]]"
- "[[entities/_index]]"
sources:
- "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
---
# Andrej Karpathy

2
wiki/hot.md
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@@ -18,7 +18,6 @@ Navigation: [[index]] | [[log]] | [[overview]]
---
## Last Updated
2026-04-07 — cosmic-brain v1.1.0 initialized. First ingest complete: Nate Herk LLM Wiki transcript.
## Key Recent Facts
- The wiki pattern was originated by [[Andrej Karpathy]] and makes knowledge compound like interest
@@ -29,7 +28,6 @@ Navigation: [[index]] | [[log]] | [[overview]]
## Recent Changes
- Created: [[LLM Wiki Pattern]], [[Hot Cache]], [[Compounding Knowledge]], [[Andrej Karpathy]]
- Created: [[Nate Herk LLM Wiki Transcript]] (first source)
- Created: seed vault structure (index, log, overview, dashboard)
- Plugin v1.1.0: added /save and /autoresearch commands

2
wiki/index.md
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@@ -30,13 +30,11 @@ Navigation: [[overview]] | [[log]] | [[hot]] | [[dashboard]] | [[Wiki Map]]
## Entities
- [[Andrej Karpathy]] — AI researcher, originated the LLM wiki pattern (first: [[Nate Herk LLM Wiki Transcript]])
---
## Sources
- [[Nate Herk LLM Wiki Transcript]] — Nate Herk, 2026-04-07, transcript
---

3
wiki/log.md
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@@ -23,11 +23,8 @@ Parse recent entries: `grep "^## \[" wiki/log.md | head -10`
---
## [2026-04-07] ingest | Nate Herk LLM Wiki Transcript
- Source: `.raw/nate-herk-llm-wiki-transcript.md`
- Summary: [[Nate Herk LLM Wiki Transcript]]
- Pages created: [[Nate Herk LLM Wiki Transcript]], [[LLM Wiki Pattern]], [[Hot Cache]], [[Compounding Knowledge]], [[Andrej Karpathy]]
- Pages updated: [[index]], [[log]], [[hot]], [[overview]]
- Key insight: The wiki pattern turns ephemeral AI chat into compounding knowledge — one user dropped token usage by 95%.

3
wiki/overview.md
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@@ -14,7 +14,6 @@ related:
- "[[dashboard]]"
- "[[LLM Wiki Pattern]]"
sources:
- "[[wiki/sources/Nate Herk LLM Wiki Transcript]]"
---
# Wiki Overview
@@ -33,7 +32,6 @@ Run `/wiki` to scaffold this vault for your own domain and replace this overview
## Current Seed Content
This vault ships with a seeded first ingest based on Nate Herk's breakdown of the Karpathy LLM wiki pattern.
**Concepts seeded:**
- [[LLM Wiki Pattern]] — the core architecture
@@ -44,7 +42,6 @@ This vault ships with a seeded first ingest based on Nate Herk's breakdown of th
- [[Andrej Karpathy]] — originated the pattern
**Sources seeded:**
- [[Nate Herk LLM Wiki Transcript]] — practical demonstration of the pattern
---

95
wiki/sources/Nate Herk LLM Wiki Transcript.md
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@@ -1,95 +0,0 @@
---
type: source
title: "Nate Herk — Obsidian + Karpathy Just 10x'd Claude Code Projects"
source_type: transcript
author: "Nate Herk"
date_published: 2026-04-07
url: "https://youtube.com/@nateherk"
confidence: high
key_claims:
- "LLM wiki makes knowledge compound like interest — nothing is re-derived on every query"
- "Hot cache (~500 words) enables cross-project context without crawling the full wiki"
- "One article generates 15-25 wiki pages with full cross-references"
- "One user dropped token usage by 95% switching from inline context files to a wiki"
- "Obsidian is the IDE, Claude is the programmer, the wiki is the codebase"
- "Index file is sufficient at small scale (~100 sources) — no RAG infrastructure needed"
created: 2026-04-07
updated: 2026-04-07
tags:
- source
- llm-wiki
- obsidian
- karpathy
status: mature
related:
- "[[LLM Wiki Pattern]]"
- "[[Hot Cache]]"
- "[[Compounding Knowledge]]"
- "[[Andrej Karpathy]]"
- "[[sources/_index]]"
- "[[index]]"
sources: []
---
# Nate Herk — Obsidian + Karpathy Just 10x'd Claude Code Projects
**Original:** [Watch on YouTube →](https://youtube.com/@nateherk)
**Credit:** All ideas in this summary belong to Nate Herk and Andrej Karpathy.
> This page is a wiki-style synthesis of the source — an example of what cosmic-brain produces after ingesting a video/transcript. The raw source is not included in the repo.
---
## What This Source Is
Nate Herk demonstrates the [[LLM Wiki Pattern]] in practice using Claude Code and Obsidian. He shows two live vaults: a YouTube transcript archive (36 videos) and a personal second brain. He breaks down [[Andrej Karpathy]]'s original post and walks through a 5-minute setup.
---
## Key Insights
**The wiki compounds.** Normal AI chat is ephemeral — knowledge disappears when the session ends. The wiki pattern changes this: every source ingested, every answer filed back, every connection made persists permanently. See [[Compounding Knowledge]].
**The hot cache is the force multiplier.** A ~500-word file (`wiki/hot.md`) captures what happened recently. New sessions read it first. Cross-project references read it first. It saves crawling dozens of wiki pages just to answer "where were we?" See [[Hot Cache]].
**The stack is intentionally simple.** Claude Code + Obsidian + a folder of markdown files. No vector databases, no embeddings, no infrastructure. The index file alone navigates hundreds of pages.
**Cross-project power.** Other Claude Code projects can reference this vault via their CLAUDE.md. Nate's executive assistant reads from his personal brain vault. Token usage dropped significantly vs inline context files.
**95% token reduction.** One X user turned 383 scattered files and 100+ meeting transcripts into a compact wiki and dropped token usage by 95% when querying with Claude.
**At scale.** The index file alone is sufficient for hundreds of pages. Vector RAG only becomes necessary at millions of documents.
---
## The Live Demo
Nate ingested one article (AI 2027) and Claude produced 23 wiki pages in ~10 minutes:
- 1 source summary
- 6 entity pages (people)
- 5 organization pages
- 1 AI systems page
- Multiple concept pages
- 1 analysis
- Open questions
This is what one ingest looks like when the wiki pattern is applied correctly.
---
## Obsidian as IDE
Obsidian serves as the visual layer. Key features used:
- **Graph view** — see which pages are hubs and which are orphans
- **Backlinks** — follow relationships between pages
- **Dataview** — query pages by frontmatter
- **Web Clipper** — send articles to `.raw/` from any browser in one click
---
## Connections
- [[LLM Wiki Pattern]] — the full architecture this source demonstrates
- [[Compounding Knowledge]] — why the pattern produces increasing returns
- [[Hot Cache]] — the session context mechanism Nate added to his executive assistant vault
- [[Andrej Karpathy]] — originated the LLM wiki pattern that this video explains

2
wiki/sources/_index.md
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@@ -9,7 +9,6 @@ tags:
status: evergreen
related:
- "[[index]]"
- "[[Nate Herk LLM Wiki Transcript]]"
---
# Sources Index
@@ -22,7 +21,6 @@ All source pages — summaries of ingested documents, transcripts, articles, and
## Transcripts
- [[Nate Herk LLM Wiki Transcript]] — Nate Herk demonstrates the LLM Wiki Pattern in practice (2026-04-07)
---